SNP Profiles of IFC 5 [CIV]   View Data

 Show/Hide Profiles

 Key

 1234567891011121314
_Input profile
CTACACGTCCGGACCCAACCAGAGAACG
1._RUQ_848
__AC_____AA_AG___
2._IFC5[CIV]
__AC_CCGGACGGAA__AGAACG
3._RUQ_848
AGACACACGGGGACGGAAGGAGAGAACG
 1516171819202122232425262728
_Input profile
AACCCTTTCCAACTTTTTGTGGTTAAGG
1._RUQ_848
_AC__CCACCT_TTGTGG_AAGG
2._IFC5[CIV]
____CCACCT______CC
3._RUQ_848
_CC_AACCACAGAA_ACGGAAAACC
 2930313233343536373839404142
_Input profile
CCCCGGTTCTGGGGTTTTTTCTCCGGAA
1._RUQ_848
__GGTT____TT___GG_
2._IFC5[CIV]
GGCC__CT_GGTT__CT_CC_
3._RUQ_848
_GGGG_AGCCGG_AAAAAGGGCCAA

Input profile: IFC_5_[CIV] RUQ_848

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._IFC_5_[CIV] RUQ_848

93.8 %
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

2._IFC_5_[CIV] IFC5[CIV]

77.5 %
20 shared markers

Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

3._IFC_5_[CIV] RUQ_848

45.8 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484